# Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis

## Documentation for package ‘Cyclops’ version 1.2.2

- DESCRIPTION file.
- Package NEWS.

## Help Pages

cyclops-package | Cyclops: Cyclic coordinate descent for logistic, Poisson and survival analysis
coef.cyclopsFit | Extract model coefficients
confint.cyclopsFit | Confidence intervals for Cyclops model parameters
convertToCyclopsData | Convert data from two data frames or ffdf objects into a CyclopsData object
convertToCyclopsData.data.frame | Convert data from two data frames or ffdf objects into a CyclopsData object
convertToCyclopsData.ffdf | Convert data from two data frames or ffdf objects into a CyclopsData object
coverage | Coverage
createAbridgePrior | Create an ABRIDGE Cyclops prior object
createControl | Create a Cyclops control object
createCyclopsData | Create a Cyclops data object
createPrior | Create a Cyclops prior object
cyclops | Cyclops: Cyclic coordinate descent for logistic, Poisson and survival analysis
fitCyclopsModel | Fit a Cyclops model
fitCyclopsSimulation | Fit simulated data
getCovariateIds | Get covariate identifiers
getCovariateTypes | Get covariate types
getHyperParameter | Get hyperparameter
getNumberOfCovariates | Get total number of covariates
getNumberOfRows | Get total number of rows
getNumberOfStrata | Get number of strata
getUnivariableCorrelation | Get univariable correlation
isInitialized | Check if a Cyclops data object is initialized
isSorted | Check if data are sorted by one or more columns
isSorted.data.frame | Check if data are sorted by one or more columns
isSorted.ffdf | Check if data are sorted by one or more columns
logLik.cyclopsFit | Extract log-likelihood
mse | Mean squared error
Multitype | Create a multitype outcome object
oxford | Oxford self-controlled case series data
predict.cyclopsFit | Model predictions
print.cyclopsData | Print a Cyclops data object
print.cyclopsFit | Print a Cyclops model fit object
readCyclopsData | Read Cyclops data from file
simulateCyclopsData | Simulation Cyclops dataset
summary.cyclopsData | Cyclops data object summary
vcov.cyclopsFit | Calculate variance-covariance matrix for a fitted Cyclops model object