Package: HTSSIP
Type: Package
Title: High Throughput Sequencing of Stable Isotope Probing Data
        Analysis
Version: 1.0.3
Authors@R: c(
    person("Nicholas", "Youngblut", email="nyoungb2@gmail.com", role=c("aut", "cre")),
    person("Samuel", "Barnett", email="seb369@cornell.edu", role=c("ctb"))
    )
Maintainer: Nicholas Youngblut <nyoungb2@gmail.com>
Description: Perform HTS-SIP analyses such as high resolution stable isotope probing (HR-SIP),
    multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable
    isotope probing (q-SIP). More information on HR-SIP, MW-HR-SIP, and q-SIP can be
    found in:
    1) Pepe-Ranney, Charles, Ashley N. Campbell, Chantal N. Koechli, Sean Berthrong, and
    Daniel H. Buckley. 2016. "Unearthing the Ecology of Soil Microorganisms Using a
    High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in
    Soil." Terrestrial Microbiology, 703. <doi:10.3389/fmicb.2016.00703>
    2) Youngblut, Nicholas D., and Daniel H. Buckley. "Evaluating the Accuracy of DNA
    Stable Isotope Probing". in prep.
    3) Hungate, Bruce A., Rebecca L. Mau, Egbert Schwartz, J. Gregory Caporaso,
    Paul Dijkstra, Natasja van Gestel, Benjamin J. Koch, et al. 2015. "Quantitative
    Microbial Ecology Through Stable Isotope Probing." Applied and Environmental
    Microbiology, August, AEM.02280-15. <doi:10.1128/AEM.02280-15>
License: GPL-2 | file LICENSE
LazyData: TRUE
Depends: R (>= 3.1.2)
Imports: magrittr (>= 1.5), stringr (>= 1.0.0), plyr (>= 1.8.4), dplyr
        (>= 0.5.0), tidyr (>= 0.5.1), ggplot2 (>= 2.1.0), DESeq2 (>=
        1.10.1), phyloseq (>= 1.14.0), coenocliner (>= 0.2.2),
        lazyeval(>= 0.2.0)
RoxygenNote: 5.0.1
Suggests: testthat, knitr, rmarkdown, doParallel
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-11-01 17:28:31 UTC; nick
Author: Nicholas Youngblut [aut, cre],
  Samuel Barnett [ctb]
Repository: CRAN
Date/Publication: 2016-11-01 23:06:54
Built: R 3.3.2; ; 2016-12-02 04:55:10 UTC; windows
