# IGM MEA Analysis

## Documentation for package ‘IGM.MEA’ version 0.3.4.1

- DESCRIPTION file.

## Help Pages

axion.elec.name.to.xy | axion.elec.name.to.xy
axion.elec2well | Extract well name from electrode name
axion.electrodes.on.well | axion.electrodes.on.well
axion.guess.well.number | axion.guess.well.number
axion.spikestodf | axion.spikestodf
axion.spikesum | axion.spikesum
axion.spikesum2 | axion.spikesum2
burstinfo | get burst feature information
calc.burst.summary | Calculate average and standard deviation of the bursting features.
calculate.isis | Calculate inter spike intervals
calculate.network.bursts | Compute network bursts for a list of MEA recordings.
calculate.network.spikes | Compute the netwrok spikes statistics from spike lists.
chem.info.2 | chem.info.2
construct.s | construct.s
filter.wells | Filter wells
get.array.info | get.array.info
get.data | get.data
get.file.basename | get.file.basename
get.num.AE | get.num.AE
get.project.plate.name | get.project.plate.name
get.wt | Get WT
has.network.spikes | A utility function to check if network spikes are detected.
IGM.aggregate.feature.data | Aggregate Feature Data
IGM.mean.firingrate.by.well | mean.firingrate.by.well
IGM.plot.active.wells.network.spikes | plot.active.wells.network.spikes
IGM.plot.distributions | calculate and plot burst featues distributions
IGM.plot.mean.firingrate.by.eletrode.by.div | plot.mean.firingrate.by.eletrode.by.div
IGM.plot.mean.firingrate.by.well.by.div | plot.mean.firingrate.by.well.by.div
IGM.plot.ns | Generic method for plotting network spikes.
IGM.plot.plate.summary.for.bursts | Plot burst features
IGM.plot.plate.summary.for.spikes | plot.plate.summary.for.spikes
IGM.summary.network.spikes | Generate network spikes based features.
IGM.write.UI.to.log | IGM.write.UI.to.log
IGM.xyplot.network.spikes | xyplot for network spikes at the plate level.
isi | isi
make.raster | make.raster
mi.find.bursts | Find bursts
NB.matrix.to.feature.dfs | Convert network burst data matrix to a list of data frames.
parameters | A list of parameters with default values that user can customize.
plateinfo | Retrieve plate information
remove.spikes | remove.spikes
S | example 'S' object
write.csv.network.spikes | Summarize and write netowrk spikes features into a csv file.
write.features.to.files | Write feature data to an output file
write.pdf | Write PDF
write.plate.summary.for.bursts | Prints bursting features
write.plate.summary.for.spikes | write.plate.summary.for.spikes