# Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)

## Documentation for package ‘JAGUAR’ version 3.0.1

- DESCRIPTION file.

## Help Pages

JAGUAR-package | Joint analysis of genotype and group-specific variability using a novel score test to map eQTL
cis_eqtl | An internal C++ function
GENEapply | An internal C++ function
jagSIM | An internal C++ function
jaguar_cis | Perform cis-eQTL analysis
jaguar_example | Simulated multi-tissue eQTL data
jaguar_gwa | Perform genome-wide analysis
jaguar_plotqtl | Plotting the eQTL results
jaguar_process | Obtain significant gene-SNP pairs based on a predetermined threshold value
jaguar_sim | Run null or power simulations
jaguar_slice | Slice gene expression data into multiple partitions
jag_fun | An internal C++ function
rowsumscpp | An internal C++ function
vcSIM | An internal C++ function