as.list,MetaArray-method	MetaArray
clinical	clinical
clinical.sum	clinical.sum
clinical<-	clinical
clinical<-, MetaArray-method	clinical
clinical<-,MetaArray-method	methods
clinical<--methods	methods
colIntersect	colIntersect
ColonData	ColonData
commonGenes	commonGenes
compute.RQ	compute.RQ
computeAlpha	computeAlpha
computeOrdering	computeOrdering
conting.tab	conting.tab
cv.filter	cv.filter
datanames	clinical
datanames<-	clinical
datanames<-, MetaArray-method	clinical
datanames<-,MetaArray-method	methods
datanames<--methods	methods
entitybuild2	entitybuild2
ES.GeneMeta	ES.GeneMeta
ES.GeneMeta.res	ES.GeneMeta
flip	flip
fold.change	fold.change
GEDM	clinical
GEDM<-	clinical
GEDM<-, MetaArray-method	clinical
GEDM<-,MetaArray-method	methods
GEDM<--methods	methods
gene.list	gene.list
gene.select.FC	gene.select.FC
join.DEG	join.DEG
join.results	join.results
make.matrix	make.matrix
MAP.genes	MAP.genes
MAP.Matches	MAP.Matches
MAP.Matches.res	MAP.Matches
MAPmatrix	MAPmatrix
MAPsig1	MAPsig1
MAPsig2	MAPsig2
MCtest	MCtest
mergedata	mergedata
mergeExprs2	mergeExprs2
meta.test	meta.test
MetaArray-class	MetaArray
metagene	metagene
metaheat	metaheat
metaheat2	metaheat2
metalist.to.matrix	metalist.to.matrix
metaMA	metaMA
metaMA.res	metaMA
METRADISC	METRADISC
METRADISC.res	METRADISC
multExpFDR	zScores
patternMatch	patternMatch
patternMatch.strong	patternMatch.strong
patternmatrix	patternmatrix
patternToString	patternToString
performSOGL	performSOGL
plot,MetaArray,ANY-method	MetaArray
plot,MetaArray,missing-method	MetaArray
plot.SOGLresult	plot.SOGLresult
plotES	plotES
plotgene	plotgene
plotgene2	plotgene2
plotpattern	plotpattern
plotQvsChi	plotQvsChi
posterior.mean	posterior.mean
prelimScore	prelimScore
prepareData	prepareData
preparePermutations	preparePermutations
print,MetaArray-method	MetaArray
probs.to.matrix	probs.to.matrix
RandomScore	RandomScore
rank.genes	rank.genes
rank.genes.adv	rank.genes.adv
RankProduct	RankProduct
RankProduct.res	RankProduct
ratio	ratio
sd.filter	sd.filter
selectAlpha	selectAlpha
selectClass	selectClass
selectGenes	selectGenes
show,MetaArray-method	MetaArray
sigScore	sigScore
T.select	T.select
test.group.shuffle	test.group.shuffle
VennMapper	VennMapper
VennMapper.res	VennMapper
Z	Z
zScoreFDR	zScores
zScorePermuted	zScores
zScores	zScores
