# Miscellaneous Esoteric Statistical Scripts

## Documentation for package ‘MESS’ version 0.4-3

- DESCRIPTION file.

## Help Pages

MESS-package | Collection of miscellaneous useful and semi-useful functions
adaptive.weights | Compute weights for use with adaptive lasso.
age | Compute the age of a person from two dates.
auc | Compute the area under the curve for two vectors.
bdstat | Danish live births and deaths
bees | Bee data. Number of different types of bees caught.
clotting | Blood clotting for 158 rats
cmd | Correlation matrix distance
col.alpha | Add and set alpha channel for RGB color
col.shade | Shade an RGB color
col.tint | Tint an RGB color
common.shared | Compute a common shared environment matrix
common.shared.pedigree | Compute a common shared environment matrix
common.shared.pedigreeList | Compute a common shared environment matrix
drop1.geeglm | Drop All Possible Single Terms to a geeglm Model Using Wald Test
earthquakes | Earthquakes in 2015
extended.shared | Compute a common shared environment matrix
extended.shared.pedigree | Compute a common shared environment matrix
extended.shared.pedigreeList | Compute a common shared environment matrix
fac2num | Convert factor to numeric vector
feature.test | Inference for features identified by the Lasso
filldown | Fill down NA with the last observed observation
geekin | Fit a generalized estimating equation (GEE) model with fixed additive correlation structure
gkgamma | Goodman-Kruskal's gamma statistic for a two-dimensional table
greenland | Average yearly summer air temperature for Tasiilaq, Greenland
happiness | Happiness score and tax rates for 148 countries
ht | Show the head and tail of an object
icecreamads | Ice cream consumption and advertising
kwdata | Non-parametric Kruskal Wallis data example
lifeexpect | Estimated life expectancy for Danish newborns
lower.tri.vector | Split Matrix by Clusters and Return Lower Triangular Parts as Vector
matched | Flu hospitalization
MESS | Collection of miscellaneous useful and semi-useful functions
mfastLm_cpp | Fast marginal simple regresion analyses
nh4 | Ammonia nitrogen found in river
ordered.clusters | Check if unique elements of a vector appear in contiguous clusters
panel.hist | Panel plot of histogram and density curve
panel.r2 | Panel plot of R2 values for pairs
picea | Ozone concentration damage to picea spruce
power.binom.test | Power Calculations for Exact Test of a simple null hypothesis in a Bernoulli experiment
power.mcnemar.test | Power Calculations for Exact and Asymptotic McNemar Test in a 2 by 2 table
power.t.test | Power calculations for one and two sample t tests with unequal sample size
print.geekin | Fit a generalized estimating equation (GEE) model with fixed additive correlation structure
qdiag | Fast extraction of matrix diagonal
QIC | Quasi Information Criterion
QIC.geeglm | Quasi Information Criterion
QIC.geekin | Quasi Information Criterion
QIC.ordgee | Quasi Information Criterion
qpcr | Gene expression from real-time quantitative PCR
quadform | Fast quadratic form computation
rainman | Perception of points in a swarm
repmat | Fast replication of a matrix
residualplot | Plots a standardaized residual
residualplot.default | Plots a standardaized residual
residualplot.lm | Plots a standardaized residual
rmvt.pedigree | Simulate residual multivariate t-distributed data from a polygenic model
rmvtnorm.pedigree | Simulate residual multivariate Gaussian data from a polygenic model
rootogram | Hanging rootogram for normal distribution
rootonorm | Hanging rootogram for normal distribution
scorefct | Internal functions for the MESS package
segregate.genes | Segregate genes through a pedigree
sinv | Invert a symmetric positive-definite matrix
smokehealth | Effect of smoking on self reported health
soccer | Danish national soccer players
superroot2 | Gene expression data from two-color dye-swap experiment
tracemp | Fast computation of trace of matrix product
wallyplot | Plots a Wally plot
wallyplot.default | Plots a Wally plot
wallyplot.lm | Plots a Wally plot
write.xml | Write a data frame in XML format