Package: PTXQC
Type: Package
Title: Quality Report Generation for MaxQuant Results
Version: 0.80.14
Date: 2016-10-13
Author: Chris Bielow <chris.bielow@mdc-berlin.de>
Maintainer: Chris Bielow <chris.bielow@mdc-berlin.de>
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the 
             MaxQuant software suite (see <http://www.maxquant.org>).
             Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
             Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
SystemRequirements: pandoc (http://pandoc.org) for building Vignettes
        and output reports as HTML
Depends: R (>= 3.0.0)
Imports: data.table, ggplot2, ggdendro, graphics, grid, gridExtra,
        grDevices, gtable, methods, plyr, proto, RColorBrewer,
        reshape2, rmarkdown, seqinr, stats, utils, yaml
Suggests: knitr (>= 1.10), testthat
VignetteBuilder: knitr
License: GPL-2
RoxygenNote: 5.0.1
URL: https://github.com/cbielow/PTXQC
BugReports: https://github.com/cbielow/PTXQC/issues
Packaged: 2016-10-13 16:11:48 UTC; cbielow
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-10-14 00:15:18
Built: R 3.3.2; ; 2016-12-02 04:07:35 UTC; windows
