# Biological Network Construction, Visualization and Analyses

## Documentation for package ‘ProNet’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

ProNet-package | Biological Network Construction, Visulization and Analyses
assemble | Operation of networks
ath | Arabidopsis thaliana Biogrid PPI database
cluster | Network clustering
comp.rand.subnet | Comparing a sub network to the randomly simulated ones
comp.subnet | Comparing a sub network to the whole one
construction | Network construction
construct_local | Local network construction
construct_nlocal | Non-local network construction
enrichment.annotation | GO enrichment annotation
extraction | Subnetwork extraction
go.profiles | GO enrichment comparison
GO_component | GO component annotation database
GO_function | GO function annotation database
GO_process | GO process annotation database
graph.add | Network union
HPRD | HPRD PPI database
human | Homo sapiens Biogrid PPI database
location | Hierarchical plot of biological network
locDB | Gene products' location database
mcode | MCODE network clustering
net.attack | Network attack
net.comparing | Comparing two networks
net.robustness | Network robustness
ProNet | Biological Network Construction, Visulization and Analyses
topology | Network topology analysis
topology_anc | Average neighborhood connectivity statistics
topology_betweenness | Betweenness statistics
topology_closeness | Closeness statistics
topology_cluster_coeffi | Clustering coefficient statistics
topology_degree | Degree statistics
topology_ec | Eigenvector centrality statistics
topology_shortest_paths | Shortest path statistics
topology_simple | Basic statistics
visualization | Network visualization