crmPack-package	crmPack-package
&,Stopping,Stopping-method	and-Stopping-Stopping-method
&,Stopping,StoppingAll-method	and-Stopping-StoppingAll-method
&,StoppingAll,Stopping-method	and-StoppingAll-Stopping-method
.AllModels	AllModels-class
.CohortSizeConst	CohortSizeConst-class
.CohortSizeDLT	CohortSizeDLT-class
.CohortSizeMax	CohortSizeMax-class
.CohortSizeMin	CohortSizeMin-class
.CohortSizeParts	CohortSizeParts-class
.CohortSizeRange	CohortSizeRange-class
.Data	Data-class
.DataDual	DataDual-class
.DataMixture	DataMixture-class
.DataParts	DataParts-class
.Design	Design-class
.DualDesign	DualDesign-class
.DualEndpoint	DualEndpoint-class
.DualEndpointBeta	DualEndpointBeta-class
.DualEndpointEmax	DualEndpointEmax-class
.DualEndpointRW	DualEndpointRW-class
.DualResponsesDesign	DualResponsesDesign-class
.DualResponsesSamplesDesign	DualResponsesSamplesDesign-class
.DualSimulations	DualSimulations-class
.DualSimulationsSummary	DualSimulationsSummary-class
.EffFlexi	EffFlexi-class
.Effloglog	Effloglog-class
.GeneralData	GeneralData-class
.GeneralModel	GeneralModel-class
.GeneralSimulations	GeneralSimulations-class
.GeneralSimulationsSummary	GeneralSimulationsSummary-class
.IncrementsRelative	IncrementsRelative-class
.IncrementsRelativeDLT	IncrementsRelativeDLT-class
.IncrementsRelativeParts	IncrementsRelativeParts-class
.LogisticIndepBeta	LogisticIndepBeta-class
.LogisticKadane	LogisticKadane-class
.LogisticLogNormal	LogisticLogNormal-class
.LogisticLogNormalMixture	LogisticLogNormalMixture-class
.LogisticLogNormalSub	LogisticLogNormalSub-class
.LogisticNormal	LogisticNormal-class
.LogisticNormalFixedMixture	LogisticNormalFixedMixture-class
.LogisticNormalMixture	LogisticNormalMixture-class
.McmcOptions	McmcOptions-class
.Model	Model-class
.ModelEff	ModelEff-class
.ModelPseudo	ModelPseudo-class
.ModelTox	ModelTox-class
.NextBestDualEndpoint	NextBestDualEndpoint-class
.NextBestMaxGain	NextBestMaxGain-class
.NextBestMaxGainSamples	NextBestMaxGainSamples-class
.NextBestMTD	NextBestMTD-class
.NextBestNCRM	NextBestNCRM-class
.NextBestTD	NextBestTD-class
.NextBestTDsamples	NextBestTDsamples-class
.NextBestThreePlusThree	NextBestThreePlusThree-class
.PseudoDualFlexiSimulations	PseudoDualFlexiSimulations-class
.PseudoDualSimulations	PseudoDualSimulations-class
.PseudoDualSimulationsSummary	PseudoDualSimulationsSummary-class
.PseudoSimulations	PseudoSimulations-class
.PseudoSimulationsSummary	PseudoSimulationsSummary-class
.RuleDesign	RuleDesign-class
.Samples	Samples-class
.Simulations	Simulations-class
.SimulationsSummary	SimulationsSummary-class
.StoppingAll	StoppingAll-class
.StoppingAny	StoppingAny-class
.StoppingCohortsNearDose	StoppingCohortsNearDose-class
.StoppingGstarCIRatio	StoppingGstarCIRatio-class
.StoppingHighestDose	StoppingHighestDose-class
.StoppingList	StoppingList-class
.StoppingMinCohorts	StoppingMinCohorts-class
.StoppingMinPatients	StoppingMinPatients-class
.StoppingMTDdistribution	StoppingMTDdistribution-class
.StoppingPatientsNearDose	StoppingPatientsNearDose-class
.StoppingTargetBiomarker	StoppingTargetBiomarker-class
.StoppingTargetProb	StoppingTargetProb-class
.StoppingTDCIRatio	StoppingTDCIRatio-class
.TDDesign	TDDesign-class
.TDsamplesDesign	TDsamplesDesign-class
AllModels-class	AllModels-class
approximate	approximate
approximate,Samples-method	approximate
as.list,GeneralData-method	as.list-GeneralData-method
biomLevel	biomLevel
biomLevel,numeric,DualEndpoint,Samples-method	biomLevel
CohortSize-class	CohortSize-class
CohortSizeConst	CohortSizeConst
CohortSizeConst-class	CohortSizeConst-class
CohortSizeDLT	CohortSizeDLT
CohortSizeDLT-class	CohortSizeDLT-class
CohortSizeMax	CohortSizeMax
CohortSizeMax-class	CohortSizeMax-class
CohortSizeMin	CohortSizeMin
CohortSizeMin-class	CohortSizeMin-class
CohortSizeParts	CohortSizeParts
CohortSizeParts-class	CohortSizeParts-class
CohortSizeRange	CohortSizeRange
CohortSizeRange-class	CohortSizeRange-class
crmPack	crmPack-package
crmPackExample	crmPackExample
crmPackHelp	crmPackHelp
Data	Data
Data-class	Data-class
DataDual	DataDual
DataDual-class	DataDual-class
DataMixture	DataMixture
DataMixture-class	DataMixture-class
DataParts	DataParts
DataParts-class	DataParts-class
Design	Design
Design-class	Design-class
dinvGamma	dinvGamma
dose	dose
dose,numeric,Model,Samples-method	dose
dose,numeric,ModelTox,missing-method	dose
dose,numeric,ModelTox,Samples-method	dose
DualDesign	DualDesign
DualDesign-class	DualDesign-class
DualEndpoint	DualEndpoint
DualEndpoint-class	DualEndpoint-class
DualEndpointBeta	DualEndpointBeta
DualEndpointBeta-class	DualEndpointBeta-class
DualEndpointEmax	DualEndpointEmax
DualEndpointEmax-class	DualEndpointEmax-class
DualEndpointOld-class	DualEndpointOld-class
DualEndpointRW	DualEndpointRW
DualEndpointRW-class	DualEndpointRW-class
DualResponsesDesign	DualResponsesDesign
DualResponsesDesign-class	DualResponsesDesign-class
DualResponsesSamplesDesign	DualResponsesSamplesDesign
DualResponsesSamplesDesign-class	DualResponsesSamplesDesign-class
DualSimulations	DualSimulations
DualSimulations-class	DualSimulations-class
DualSimulationsSummary-class	DualSimulationsSummary-class
EffFlexi	EffFlexi
EffFlexi-class	EffFlexi-class
Effloglog	Effloglog
Effloglog-class	Effloglog-class
examine	examine
examine,Design-method	examine
examine,RuleDesign-method	examine
ExpEff	ExpEff
ExpEff,numeric,EffFlexi,Samples-method	ExpEff
ExpEff,numeric,Effloglog,missing-method	ExpEff
ExpEff,numeric,Effloglog,Samples-method	ExpEff
fit	fit
fit,Samples,DualEndpoint,DataDual-method	fit
fit,Samples,EffFlexi,DataDual-method	fit
fit,Samples,Effloglog,DataDual-method	fit
fit,Samples,LogisticIndepBeta,Data-method	fit
fit,Samples,Model,Data-method	fit
fitGain	fitGain
fitGain,ModelTox,Samples,ModelEff,Samples,DataDual-method	fitGain
gain	gain
gain,numeric,ModelTox,missing,Effloglog,missing-method	gain
gain,numeric,ModelTox,Samples,EffFlexi,Samples-method	gain
gain,numeric,ModelTox,Samples,Effloglog,Samples-method	gain
GeneralData-class	GeneralData-class
GeneralModel-class	GeneralModel-class
GeneralSimulations	GeneralSimulations
GeneralSimulations-class	GeneralSimulations-class
GeneralSimulationsSummary-class	GeneralSimulationsSummary-class
get,Samples,character-method	get-Samples-character-method
getEff	getEff
getEff,DataDual-method	getEff
getMinInfBeta	getMinInfBeta
getResultList	getResultList
Increments-class	Increments-class
IncrementsRelative	IncrementsRelative
IncrementsRelative-class	IncrementsRelative-class
IncrementsRelativeDLT	IncrementsRelativeDLT
IncrementsRelativeDLT-class	IncrementsRelativeDLT-class
IncrementsRelativeParts	IncrementsRelativeParts
IncrementsRelativeParts-class	IncrementsRelativeParts-class
initialize,DualEndpointOld-method	initialize-DualEndpointOld-method
is.bool	is.bool
is.probability	is.probability
is.probRange	is.probRange
is.scalar	is.scalar
is.wholenumber	is.wholenumber
joinBodies	joinBodies
joinModels	joinModels
LogisticIndepBeta	LogisticIndepBeta
LogisticIndepBeta-class	LogisticIndepBeta-class
LogisticKadane	LogisticKadane
LogisticKadane-class	LogisticKadane-class
LogisticLogNormal	LogisticLogNormal
LogisticLogNormal-class	LogisticLogNormal-class
LogisticLogNormalMixture	LogisticLogNormalMixture
LogisticLogNormalMixture-class	LogisticLogNormalMixture-class
LogisticLogNormalSub	LogisticLogNormalSub
LogisticLogNormalSub-class	LogisticLogNormalSub-class
LogisticNormal	LogisticNormal
LogisticNormal-class	LogisticNormal-class
LogisticNormalFixedMixture	LogisticNormalFixedMixture
LogisticNormalFixedMixture-class	LogisticNormalFixedMixture-class
LogisticNormalMixture	LogisticNormalMixture
LogisticNormalMixture-class	LogisticNormalMixture-class
logit	logit
maxDose	maxDose
maxDose,IncrementsRelative,Data-method	maxDose
maxDose,IncrementsRelativeDLT,Data-method	maxDose
maxDose,IncrementsRelativeParts,DataParts-method	maxDose
maxSize	maxSize
maxSize,CohortSize-method	maxSize
mcmc	mcmc
mcmc,Data,LogisticIndepBeta,McmcOptions-method	mcmc
mcmc,Data,LogisticNormal,McmcOptions-method	mcmc
mcmc,DataDual,EffFlexi,McmcOptions-method	mcmc
mcmc,DataDual,Effloglog,McmcOptions-method	mcmc
mcmc,GeneralData,GeneralModel,McmcOptions-method	mcmc
McmcOptions	McmcOptions
McmcOptions-class	McmcOptions-class
MinimalInformative	MinimalInformative
minSize	minSize
minSize,CohortSize-method	minSize
Model-class	Model-class
ModelEff-class	ModelEff-class
ModelPseudo-class	ModelPseudo-class
ModelTox-class	ModelTox-class
multiplot	multiplot
myBarplot	myBarplot
nextBest	nextBest
nextBest,NextBestDualEndpoint,numeric,Samples,DualEndpoint,Data-method	nextBest
nextBest,NextBestMaxGain,numeric,missing,ModelTox,DataDual-method	nextBest
nextBest,NextBestMaxGainSamples,numeric,Samples,ModelTox,DataDual-method	nextBest
nextBest,NextBestMTD,numeric,Samples,Model,Data-method	nextBest
nextBest,NextBestNCRM,numeric,Samples,Model,Data-method	nextBest
nextBest,NextBestNCRM,numeric,Samples,Model,DataParts-method	nextBest
nextBest,NextBestTD,numeric,missing,LogisticIndepBeta,Data-method	nextBest
nextBest,NextBestTDsamples,numeric,Samples,LogisticIndepBeta,Data-method	nextBest
nextBest,NextBestThreePlusThree,missing,missing,missing,Data-method	nextBest
NextBest-class	NextBest-class
NextBestDualEndpoint	NextBestDualEndpoint
NextBestDualEndpoint-class	NextBestDualEndpoint-class
NextBestMaxGain	NextBestMaxGain
NextBestMaxGain-class	NextBestMaxGain-class
NextBestMaxGainSamples	NextBestMaxGainSamples
NextBestMaxGainSamples-class	NextBestMaxGainSamples-class
NextBestMTD	NextBestMTD
NextBestMTD-class	NextBestMTD-class
NextBestNCRM	NextBestNCRM
NextBestNCRM-class	NextBestNCRM-class
NextBestTD	NextBestTD
NextBestTD-class	NextBestTD-class
NextBestTDsamples	NextBestTDsamples
NextBestTDsamples-class	NextBestTDsamples-class
NextBestThreePlusThree	NextBestThreePlusThree
NextBestThreePlusThree-class	NextBestThreePlusThree-class
noOverlap	noOverlap
or-Stopping-Stopping	or-Stopping-Stopping
or-Stopping-StoppingAny	or-Stopping-StoppingAny
or-StoppingAny-Stopping	or-StoppingAny-Stopping
pinvGamma	pinvGamma
plot,Data,missing-method	plot-Data-missing-method
plot,Data,ModelTox-method	plot-Data-ModelTox-method
plot,DataDual,missing-method	plot-DataDual-missing-method
plot,DataDual,ModelEff-method	plot-DataDual-ModelEff-method
plot,DualSimulations,missing-method	plot-DualSimulations-missing-method
plot,DualSimulationsSummary,missing-method	plot-DualSimulationsSummary-missing-method
plot,GeneralSimulations,missing-method	plot-GeneralSimulations-missing-method
plot,GeneralSimulationsSummary,missing-method	plot-GeneralSimulationsSummary-missing-method
plot,PseudoDualFlexiSimulations,missing-method	plot-PseudoDualFlexiSimulations-missing-method
plot,PseudoDualSimulations,missing-method	plot-PseudoDualSimulations-missing-method
plot,PseudoDualSimulationsSummary,missing-method	plot-PseudoDualSimulationsSummary-missing-method
plot,PseudoSimulationsSummary,missing-method	plot-PseudoSimulationsSummary-missing-method
plot,Samples,DualEndpoint-method	plot-Samples-DualEndpoint-method
plot,Samples,Model-method	plot-Samples-Model-method
plot,Samples,ModelEff-method	plot-Samples-ModelEff-method
plot,Samples,ModelTox-method	plot-Samples-ModelTox-method
plot,SimulationsSummary,missing-method	plot-SimulationsSummary-missing-method
plot.gtable	plot.gtable
plotDualResponses	plotDualResponses
plotDualResponses,ModelTox,missing,ModelEff,missing-method	plotDualResponses
plotDualResponses,ModelTox,Samples,ModelEff,Samples-method	plotDualResponses
plotGain	plotGain
plotGain,ModelTox,missing,ModelEff,missing-method	plotGain
plotGain,ModelTox,Samples,ModelEff,Samples-method	plotGain
printVignette	printVignette
prob	prob
prob,numeric,Model,Samples-method	prob
prob,numeric,ModelTox,missing-method	prob
prob,numeric,ModelTox,Samples-method	prob
PseudoDualFlexiSimulations	PseudoDualFlexiSimulations
PseudoDualFlexiSimulations-class	PseudoDualFlexiSimulations-class
PseudoDualSimulations	PseudoDualSimulations
PseudoDualSimulations-class	PseudoDualSimulations-class
PseudoDualSimulationsSummary-class	PseudoDualSimulationsSummary-class
PseudoSimulations	PseudoSimulations
PseudoSimulations-class	PseudoSimulations-class
PseudoSimulationsSummary-class	PseudoSimulationsSummary-class
qinvGamma	qinvGamma
Quantiles2LogisticNormal	Quantiles2LogisticNormal
Report	Report
rinvGamma	rinvGamma
RuleDesign	RuleDesign
RuleDesign-class	RuleDesign-class
safeInteger	safeInteger
Samples	Samples
Samples-class	Samples-class
sampleSize	sampleSize
saveSample	saveSample
setSeed	setSeed
show,DualSimulationsSummary-method	show-DualSimulationsSummary-method
show,GeneralSimulationsSummary-method	show-GeneralSimulationsSummary-method
show,PseudoDualSimulationsSummary-method	show-PseudoDualSimulationsSummary-method
show,PseudoSimulationsSummary-method	show-PseudoSimulationsSummary-method
show,SimulationsSummary-method	show-SimulationsSummary-method
simulate,Design-method	simulate-Design-method
simulate,DualDesign-method	simulate-DualDesign-method
simulate,DualResponsesDesign-method	simulate-DualResponsesDesign-method
simulate,DualResponsesSamplesDesign-method	simulate-DualResponsesSamplesDesign-method
simulate,RuleDesign-method	simulate-RuleDesign-method
simulate,TDDesign-method	simulate-TDDesign-method
simulate,TDsamplesDesign-method	simulate-TDsamplesDesign-method
Simulations	Simulations
Simulations-class	Simulations-class
SimulationsSummary-class	SimulationsSummary-class
size	size
size,CohortSizeConst,ANY,Data-method	size
size,CohortSizeDLT,ANY,Data-method	size
size,CohortSizeMax,ANY,Data-method	size
size,CohortSizeMin,ANY,Data-method	size
size,CohortSizeParts,ANY,DataParts-method	size
size,CohortSizeRange,ANY,Data-method	size
Stopping-class	Stopping-class
StoppingAll	StoppingAll
StoppingAll-class	StoppingAll-class
StoppingAny	StoppingAny
StoppingAny-class	StoppingAny-class
StoppingCohortsNearDose	StoppingCohortsNearDose
StoppingCohortsNearDose-class	StoppingCohortsNearDose-class
StoppingGstarCIRatio	StoppingGstarCIRatio
StoppingGstarCIRatio-class	StoppingGstarCIRatio-class
StoppingHighestDose	StoppingHighestDose
StoppingHighestDose-class	StoppingHighestDose-class
StoppingList	StoppingList
StoppingList-class	StoppingList-class
StoppingMinCohorts	StoppingMinCohorts
StoppingMinCohorts-class	StoppingMinCohorts-class
StoppingMinPatients	StoppingMinPatients
StoppingMinPatients-class	StoppingMinPatients-class
StoppingMTDdistribution	StoppingMTDdistribution
StoppingMTDdistribution-class	StoppingMTDdistribution-class
StoppingPatientsNearDose	StoppingPatientsNearDose
StoppingPatientsNearDose-class	StoppingPatientsNearDose-class
StoppingTargetBiomarker	StoppingTargetBiomarker
StoppingTargetBiomarker-class	StoppingTargetBiomarker-class
StoppingTargetProb	StoppingTargetProb
StoppingTargetProb-class	StoppingTargetProb-class
StoppingTDCIRatio	StoppingTDCIRatio
StoppingTDCIRatio-class	StoppingTDCIRatio-class
stopTrial	stopTrial
stopTrial,StoppingAll,ANY,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingAny,ANY,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingCohortsNearDose,numeric,ANY,ANY,Data-method	stopTrial
stopTrial,StoppingGstarCIRatio,ANY,missing,ModelTox,DataDual-method	stopTrial
stopTrial,StoppingGstarCIRatio,ANY,Samples,ModelTox,DataDual-method	stopTrial
stopTrial,StoppingHighestDose,numeric,ANY,ANY,Data-method	stopTrial
stopTrial,StoppingList,ANY,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingMinCohorts,ANY,ANY,ANY,Data-method	stopTrial
stopTrial,StoppingMinPatients,ANY,ANY,ANY,Data-method	stopTrial
stopTrial,StoppingMTDdistribution,numeric,Samples,Model,ANY-method	stopTrial
stopTrial,StoppingPatientsNearDose,numeric,ANY,ANY,Data-method	stopTrial
stopTrial,StoppingTargetBiomarker,numeric,Samples,DualEndpoint,ANY-method	stopTrial
stopTrial,StoppingTargetProb,numeric,Samples,Model,ANY-method	stopTrial
stopTrial,StoppingTDCIRatio,ANY,missing,ModelTox,ANY-method	stopTrial
stopTrial,StoppingTDCIRatio,ANY,Samples,ModelTox,ANY-method	stopTrial
summary,DualSimulations-method	summary-DualSimulations-method
summary,GeneralSimulations-method	summary-GeneralSimulations-method
summary,PseudoDualFlexiSimulations-method	summary-PseudoDualFlexiSimulations-method
summary,PseudoDualSimulations-method	summary-PseudoDualSimulations-method
summary,PseudoSimulations-method	summary-PseudoSimulations-method
summary,Simulations-method	summary-Simulations-method
TDDesign	TDDesign
TDDesign-class	TDDesign-class
TDsamplesDesign	TDsamplesDesign
TDsamplesDesign-class	TDsamplesDesign-class
ThreePlusThreeDesign	ThreePlusThreeDesign
update,Data-method	update-Data-method
update,DataDual-method	update-DataDual-method
update,DataParts-method	update-DataParts-method
update,EffFlexi-method	update-EffFlexi-method
update,Effloglog-method	update-Effloglog-method
update,LogisticIndepBeta-method	update-LogisticIndepBeta-method
Validate	Validate
writeModel	writeModel
|,Stopping,Stopping-method	or-Stopping-Stopping
|,Stopping,StoppingAny-method	or-StoppingAny-Stopping
|,StoppingAny,Stopping-method	or-Stopping-StoppingAny
