humarray-package	humarray-package
.makeNakedMatFromChipInfo	humarray-internal
.rownames3	humarray-internal
.updateAllele	humarray-internal
A1	allele-methods
A1,ChipInfo-method	allele-methods
A1<-	allele-methods
A1<-,ChipInfo-method	allele-methods
A2	allele-methods
A2,ChipInfo-method	allele-methods
A2<-	allele-methods
A2<-,ChipInfo-method	allele-methods
AB	AB
add.trail	humarray-internal
as	as
Band	Band
Band.gene	Band.gene
Band.pos	Band.pos
chip	chip-methods
chip,ChipInfo-method	chip-methods
chip.support	chip.support
chipId	chipId-methods
chipId,ChipInfo-method	chipId-methods
ChipInfo	ChipInfo
ChipInfo-class	ChipInfo-class
ChipInfo-method	ChipInfo-class
Chr	Chr
chr2	humarray-internal
chrGS	humarray-internal
chrIndices,RangedData-method	chrIndices-methods
chrIndices-methods	chrIndices-methods
chrIndices2	humarray-internal
chrIndicesGS	humarray-internal
chrInfo,RangedData-method	chrInfo-methods
chrInfo-methods	chrInfo-methods
chrInfo2	humarray-internal
chrInfoGS	humarray-internal
chrm	chrm-methods
chrm,ChipInfo-method	chrm-methods
chrm,GRanges-method	chrm-methods
chrm,RangedData-method	chrm-methods
chrNames,RangedData-method	chrNames-methods
chrNames-methods	chrNames-methods
chrnames.to.num	humarray-internal
chrNames2	humarray-internal
chrNums	chrNums
chrnums.to.txt	humarray-internal
chrOrder2	humarray-internal
chrPartitioning2	humarray-internal
chrSel	chrSel-methods
chrSel,ChipInfo-method	chrSel-methods
chrSel,GRanges-method	chrSel-methods
chrSel,RangedData-method	chrSel-methods
chrSelect	chrSelect
clean.snp.ids	humarray-internal
coerce,ChipInfo,data.frame-method	coerce-methods
coerce,ChipInfo,GRanges-method	coerce-methods
coerce,ChipInfo,RangedData-method	coerce-methods
coerce,data.frame,ChipInfo-method	coerce-methods
coerce,data.frame,GRanges-method	coerce-methods
coerce,data.frame,RangedData-method	coerce-methods
coerce,GRanges,ChipInfo-method	coerce-methods
coerce,GRanges,data.frame-method	coerce-methods
coerce,RangedData,ChipInfo-method	coerce-methods
coerce,RangedData,data.frame-method	coerce-methods
coerce-methods	coerce-methods
coerce<-,ChipInfo,GRanges-method	coerce_--methods
coerce<--methods	coerce_--methods
comma	humarray-internal
compact.gene.list	compact.gene.list
conv.36.37	conv.36.37
conv.37.36	conv.37.36
conv.37.38	conv.37.38
conv.38.37	conv.38.37
convert.textpos.to.data	convert.textpos.to.data
convTo36	conv-methods
convTo36,ChipInfo-method	conv-methods
convTo37	conv-methods
convTo37,ChipInfo-method	conv-methods
convTo38	conv-methods
convTo38,ChipInfo-method	conv-methods
Cor	humarray-internal
df.to.GRanges	df.to.GRanges
df.to.ranged	df.to.ranged
dim,ChipInfo-method	ChipInfo-methods
do.cw	humarray-internal
egSymb	humarray-internal
emd.rmv	humarray-internal
endSnp	endSnp
ENS.to.GENE	ENS.to.GENE
expand.nsnp	expand.nsnp
extraColumnSlotNames2	humarray-internal
extraColumnSlotNames2,ANY-method	extraColumnSlotNames2-methods
extraColumnSlotNames2-methods	extraColumnSlotNames2-methods
extraColumnSlots2	humarray-internal
finitize	humarray-internal
force.chr.pos	force.chr.pos
gene.duplicate.report	humarray-internal
Gene.pos	Gene.pos
GENE.to.ENS	GENE.to.ENS
get.centromere.locs	get.centromere.locs
get.chr.lens	get.chr.lens
get.cyto	get.cyto
get.exon.annot	get.exon.annot
get.gene.annot	get.gene.annot
get.genic.subset	get.genic.subset
get.GO.for.genes	get.GO.for.genes
get.immunobase.snps	get.immunobase.snps
get.immunog.locs	get.immunog.locs
get.nearby.snp.lists	get.nearby.snp.lists
get.recombination.map	get.recombination.map
get.t1d.regions	get.t1d.regions
get.t1d.subset	get.t1d.subset
get.telomere.locs	get.telomere.locs
GRanges	plot-methods
GRanges-method	plot-methods
hard.coded.conv	humarray-internal
hg18ToHg19	humarray-internal
hg19ToHg18	humarray-internal
hg19ToHg38	humarray-internal
hg38ToHg19	humarray-internal
humarray	humarray-package
iChipRegionsB36	iChipRegionsB36
id.to.rs	id.to.rs
ids.by.pos	ids.by.pos
ImmunoChipB37	ImmunoChipB37
in.window	in.window
initialize,ChipInfo-method	ChipInfo-class
invGRanges	invGRanges
l10	humarray-internal
lambda_1000	lambda_1000
length,ChipInfo-method	ChipInfo-methods
make.divisor	humarray-internal
makeGRanges	makeGRanges
makePrettyMatrixForCompactPrinting2	humarray-internal
manifest	manifest
maxna	humarray-internal
meanna	humarray-internal
medianna	humarray-internal
meta.me	meta.me
minna	humarray-internal
nearest.gene	nearest.gene
nearest.snp	nearest.snp
order.chr	humarray-internal
pduplicated	humarray-internal
plot,GRanges,ANY-method	plot-methods
plot,RangedData,ANY-method	plot-methods
plot.get.area	humarray-internal
plotdf	humarray-internal
plotGeneAnnot	plotGeneAnnot
plotRanges	plotRanges
Pos	Pos
Pos.band	Pos.band
Pos.gene	Pos.gene
print,ChipInfo-method	ChipInfo-methods
pt2	humarray-internal
QCcode	QC-methods
QCcode,ChipInfo-method	QC-methods
QCcode<-	QC-methods
QCcode<-,ChipInfo-method	QC-methods
QCfail	QC-methods
QCfail,ChipInfo-method	QC-methods
QCpass	QC-methods
QCpass,ChipInfo-method	QC-methods
ranged.to.data.frame	ranged.to.data.frame
ranged.to.txt	ranged.to.txt
RangedData	plot-methods
RangedData-method	plot-methods
rangeSnp	rangeSnp
recomWindow	recomWindow
rmv.trail	humarray-internal
rownames,ChipInfo-method	ChipInfo-methods
rownames,GRanges-method	GRanges-methods
rownames<-,GRanges-method	rownames_--methods
rownames<--methods	rownames_--methods
rranges	rranges
rs.id	rs.id-methods
rs.id,ChipInfo-method	rs.id-methods
rs.to.id	rs.to.id
rsampid	humarray-internal
rsnpid	humarray-internal
sdna	humarray-internal
select.autosomes	select.autosomes
set.chr.to.char	set.chr.to.char
set.chr.to.numeric	set.chr.to.numeric
show,ChipInfo-method	ChipInfo-methods
showChipInfo	showChipInfo
snps.in.range	snps.in.range
sort.chr	humarray-internal
sortna	humarray-internal
startSnp	startSnp
substitute.36s	humarray-internal
sumna	humarray-internal
TGOGR	humarray-internal
TGORD	humarray-internal
tidy.extra.chr	humarray-internal
toGenomeOrder2	humarray-internal
ucsc	ucsc-methods
ucsc,ChipInfo-method	ucsc-methods
ucsc.sanitizer	humarray-internal
validate.dir.for	humarray-internal
[[,ChipInfo,ANY,ANY-method	ChipInfo-subset
