Package: manhattanly
Type: Package
Title: Interactive Q-Q and Manhattan Plots Using 'plotly.js'
Version: 0.2.0
Date: 2016-11-17
LazyData: true
Authors@R: c(person("Sahir", "Bhatnagar", email = "sahir.bhatnagar@gmail.com",
    role = c("aut", "cre"), comment = "http://sahirbhatnagar.com/"))
Description: Create interactive Q-Q, manhattan and volcano plots that are usable from the R console,
    in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps.
    Hover the mouse pointer over a point to show details or drag a rectangle to
    zoom. A manhattan plot is a popular graphical method for visualizing results
    from high-dimensional data analysis such as a (epi)genome wide association study
    (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter
    plot against their genomic position. Manhattan plots are used for visualizing
    potential regions of interest in the genome that are associated with a phenotype.
    Interactive manhattan plots allow the inspection of specific value (e.g. rs number or
    gene name) by hovering the mouse over a cell, as well as zooming into a region of the
    genome (e.g. a chromosome) by dragging a rectangle around the relevant area.
    This work is based on the 'qqman' package by Stephen Turner and the 'plotly.js'
    engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq'
    functions in the 'qqman' package, with the advantage of including extra annotation 
    information and interactive web-based visualizations directly from R. 
    Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) 
    can be viewed and modified in a web browser.
Depends: R (>= 3.0.0)
Imports: stats, magrittr (>= 1.0.1), plotly (>= 4.5.6), ggplot2 (>=
        2.1.0)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
License: MIT + file LICENSE
URL: https://github.com/sahirbhatnagar/manhattanly/,
        http://sahirbhatnagar.com/manhattanly/
BugReports: https://github.com/sahirbhatnagar/manhattanly/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-11-15 23:55:25 UTC; sahir
Author: Sahir Bhatnagar [aut, cre] (http://sahirbhatnagar.com/)
Maintainer: Sahir Bhatnagar <sahir.bhatnagar@gmail.com>
Repository: CRAN
Date/Publication: 2016-11-16 01:56:53
Built: R 3.3.2; ; 2016-12-02 04:58:10 UTC; windows
