Package: phyclust
Version: 0.1-17
Date: 2016-07-14
Title: Phylogenetic Clustering (Phyloclustering)
Authors@R: c(person("Wei-Chen", "Chen", role = c("aut", "cre"), email =
        "wccsnow@gmail.com"), person("Karin", "Dorman", role =
        "aut"))
Depends: R (>= 3.0.0), ape
LazyLoad: yes
LazyData: yes
Copyright: See phyclust/inst/Documents/ for files in src/msdir/,
        src/seq-gen/, src/paml_baseml, and R/ttzeng-*.r.
Description: Phylogenetic clustering (phyloclustering) is an evolutionary
        Continuous Time Markov Chain model-based approach to identify
        population structure from molecular data without assuming
        linkage equilibrium. The package phyclust (Chen 2011) provides a
        convenient implementation of phyloclustering for DNA and SNP data,
        capable of clustering individuals into subpopulations and identifying
        molecular sequences representative of those subpopulations. It is
        designed in C for performance, interfaced with R for visualization,
        and incorporates other popular open source programs including
        ms (Hudson 2002), seq-gen (Rambaut and Grassly 1997),
        Hap-Clustering (Tzeng 2005) and PAML baseml (Yang 1997, 2007), for
        simulating data, additional analyses, and searching the best tree.
        See the phyclust website for more information, documentations and
        examples.
BugReports: https://github.com/snoweye/phyclust/issues
License: GPL (>= 2)
URL: http://thirteen-01.stat.iastate.edu/snoweye/phyclust/
NeedsCompilation: yes
Packaged: 2016-07-15 03:29:13 UTC; snoweye
Author: Wei-Chen Chen [aut, cre],
  Karin Dorman [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-15 10:14:34
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