# Measure Growth Patterns and Align Sampling Spots in Photographs

## Documentation for package ‘sclero’ version 0.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

sclero-package | Measure Growth Patterns and Align Sampling Spots in Photographs
assign.size | Assign spot sizes to 'rawDist' objects for estimating spatial extent of sample averaging error.
assign.value | Assign values to 'rawDist' objects for plotting.
barium | Barium to calcium ratios for sample spots in shellspots dataset
coln | Print the order and names of columns in a data frame
convert.ijdata | Convert IJDATA object to a list of spatstat objects
create.rawDist | Create rawDist data from arbitary coordinates
order.ijdata | Order IJDATA spot sequences and growth lines
plot.rawDist | Plot rawDist object
plot.spotDist | Plot spotDist object
print.spotDist | Print 'spotDist' objects
read.ijdata | Read ImageJ zip file containing several ROI files and extract coordinate information.
samplemap | Common plotting function for plot.rawDist and plot.spotDist functions
sclero | Measure Growth Patterns and Align Sampling Spots in Photographs
shellsizes | Coordinates of sample spots together with spot size information and growth lines along a bivalve mollusk shell section
shellspots | Coordinates of sample spots and growth lines along a bivalve mollusk shell section
spot.dist | Distance of sampling spots from margin along a measurement axis