Package: strataG
Title: Summaries and Population Structure Analyses of Genetic Data
Description: A toolkit for analyzing stratified population genetic data.
Version: 1.0.5
License: GNU General Public License
Authors@R: c(
  EA = person("Eric", "Archer", email = "eric.archer@noaa.gov", role = c("aut", "cre")),
  PA = person("Paula", "Adams", email = "peadams@crimson.ua.edu", role = c("aut")),
  BS = person("Brita", "Schneiders", email = "britaschneiders@u.northwestern.edu", role = c("aut")))
BugReports: https://github.com/EricArcher/strataG/issues
Depends: R (>= 3.2.0), apex, adegenet
Suggests: knitr, rmarkdown
Imports: ape, copula, ggplot2, graphics, Hmisc, methods, pegas,
        phangorn, RColorBrewer, Rcpp, reshape2, stats, swfscMisc, utils
Collate: strataG-package.R gtypes.class.R gtypes.accessors.R
        is.gtypes.R initialize.gtypes.R strataG-internal.R
        as.matrix.gtypes.R as.data.frame.gtypes.R alleleFreqFormat.R
        alleleFreqs.R alleleSplit.R allelicRichness.R as.multidna.R
        baseFreqs.R clumpp.R createConsensus.R dupGenotypes.R evanno.R
        expectedNumAlleles.R fasta.R fastsimcoal.input.R fastsimcoal.R
        fixedDifferences.R fixedSites.R freq2GenData.R fstToNm.R
        fusFs.R gelato.R genepop.R haplotypeLikelihoods.R
        heterozygosity.R Hstats.R hweTest.R idRows.R iupacCode.R
        jackHWE.R labelHaplotypes.R LDgenepop.R lowFreqSubs.R mRatio.R
        mafft.R mega.R mostDistantSequences.R
        mostRepresentativeSequences.R neiDa.R nucleotideDivergence.R
        nucleotideDiversity.R numAlleles.R numGensEq.R numMissing.R
        permuteStrata.R phase.R popStructStat.R popStructTest.R
        privateAlleles.R propUniqueAlleles.R qaqc.R RcppExports.R
        readGenData.R removeSequences.R sharedLoci.R show.gtypes.R
        simGammaHaps.R statChi2.R statFis.R statFst.R statGst.R
        statJostD.R statPhist.R strataSplit.R stratify.R structure.R
        structurePlot.R summarizeLoci.R summarizeSeqs.R
        summary.gtypes.R tajimasD.R theta.R TiTvRatio.R trimNs.R
        validIupacCodes.R variableSites.R wrightFst.R write.arlequin.R
        write.gtypes.R write.nexus.snapp.R gtypes2genind.R
        gtypes2loci.R df2gtypes.R sequence2gtypes.R gtypes2phyDat.R
LazyData: true
VignetteBuilder: knitr
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-30 22:38:19 UTC; eric.archer
Author: Eric Archer [aut, cre],
  Paula Adams [aut],
  Brita Schneiders [aut]
Maintainer: Eric Archer <eric.archer@noaa.gov>
Repository: CRAN
Date/Publication: 2016-05-31 07:51:52
Built: R 3.3.2; x86_64-w64-mingw32; 2016-12-02 05:07:34 UTC; windows
Archs: i386, x64
