Package: sybil
Type: Package
Title: Efficient Constrained Based Modelling in R
Version: 2.0.0
Date: 2016-05-25
Authors@R: c(
	     person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
	     person("Gabriel", "Gelius-Dietrich", role = c("aut")),
             person("Rajen", "Piernikarczyk", role = "ctb"),
             person(c("Marc", "Andre"), "Daxer", role = "ctb"),
             person("Benjamin", "Braasch", role = "ctb"),
             person("Abdelmoneim", "Desouki", role = "ctb"),
             person(c("Martin", "J."), "Lercher", role = "ctb"))
Maintainer: C. Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
Depends: R (>= 2.14.2), Matrix, lattice
Imports: methods
Suggests: glpkAPI (>= 1.2.8), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.4),
        lpSolveAPI (>= 5.5.2.0), parallel, grid
URL:
        http://www.cs.hhu.de/en/research-groups/bioinformatics/software/sybil.html
Description: This Systems Biology Library for R implements algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis). Most of the current LP/MILP solvers are supported via additional packages.
LazyLoad: yes
License: GPL-3 | file LICENSE
Collate: generics.R validmodelorg.R validoptsol.R validreactId.R
        validreactId_Exch.R validsysBiolAlg.R addAlgorithm.R
        addExchReact.R addReact.R addSolver.R blockedReact.R
        bracket_pairs.R ceilValues.R changeBounds.R changeGPR.R
        changeObjFunc.R checkAlgorithm.R checkDefaultMethod.R
        checkEmptyField.R checkReactId.R check_brackets.R
        createReactionString.R deadEndMetabolite.R doInRound.R
        doubleFluxDel.R doubleGeneDel.R doubleReact.R editEnvir.R
        findExchReact.R floorValues.R fluxVar.R geneDel.R
        geneDeletion.R generateFluxdels.R generateModKey.R generateWT.R
        getsybilenv.R makeLPcompatible.R mod2irrev.R modelorg2ExPA.R
        modelorg2text.R modelorg2tsv.R multiDel.R oneFluxDel.R
        oneGeneDel.R onlyChangeGPR.R onlyCheckGPR.R optObj_basicfunc.R
        optObj_lpSolveAPIcompat.R optimizer.R parseBoolean.R phpp.R
        ppProcessing.R prepareSubSysMatrix.R printLogComment.R
        printNamedList.R progress.R promptSysBiolAlg.R recodeMatrix.R
        readTEXTmod.R readTSVmod.R reassignFwBwMatch.R rmReact.R
        robAna.R settings.R singletonMetabolite.R sybilStack.R ypd.R
        zzz.R modelorgClass.R modelorg_irrevClass.R optObj_pointer.R
        optObjClass.R optObj_clpAPIClass.R optObj_cplexAPIClass.R
        optObj_glpkAPIClass.R optObj_lpSolveAPIClass.R
        sybilErrorClass.R ppProcClass.R netFluxClass.R
        fluxDistributionClass.R reactIdClass.R reactId_ExchClass.R
        optsolClass.R optsol_blockedReactClass.R
        optsol_optimizeProbClass.R optsol_fluxVarClass.R
        optsol_fluxdelClass.R optsol_robAnaClass.R optsol_phppClass.R
        optsol_genedelClass.R checksolClass.R summaryOptsolClass.R
        sysBiolAlgClass.R sysBiolAlg_fbaClass.R
        sysBiolAlg_fbaEasyConstraintClass.R sysBiolAlg_fvClass.R
        sysBiolAlg_lmomaClass.R sysBiolAlg_momaClass.R
        sysBiolAlg_mtfClass.R sysBiolAlg_mtfEasyConstraintClass.R
        sysBiolAlg_roomClass.R sybilLogClass.R upgradeModelorg.R
Packaged: 2016-06-06 12:23:22 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb],
  Gabriel Gelius-Dietrich [aut],
  Rajen Piernikarczyk [ctb],
  Marc Andre Daxer [ctb],
  Benjamin Braasch [ctb],
  Abdelmoneim Desouki [ctb],
  Martin J. Lercher [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-06-06 20:23:29
Built: R 3.3.2; ; 2016-12-02 03:03:07 UTC; windows
