# Draw and display a Venn diagram

## Usage

    venn(x, snames = c(""), ilabels = FALSE, counts = FALSE, zcolor = c("bw"), transparency = 0.3, ellipse = FALSE, size = 15, cexil = 0.45, cexsn = 0.85, ...)

## Arguments

x
  A single number (of sets), or a metacommand formula (see details), or a list containing set values, or a dataset containing boolean values.
snames
  An optional parameter containing the names for each set.
ilabels
  Logical, print the labels for each intersection.
counts
  Logical, print the counts for each intersection.
zcolor
  A vector of colors for the custom zones, or predefined colors if "style"
transparency
  Transparency for the color(s) specified with `zcolor`
ellipse
  Logical, force the shape to an ellipse, where possible
size
  Plot size, in centimeters.
cexil
  Character expansion for the intersection labels
cexsn
  Character expansion for the set names
...
  Additional parameters, mainly for the outer borders of the sets

## Description

This function uses a variety of input data to draw and display a Venn diagram with up to 7 sets.

## Details

The argument `x` can be either: - a single number of sets, between 1 and 7 - a metacommand (character) to draw custom intersection zones - a list, containing values for the different sets: each component is a set, and only up to 7 components are processed. - a dataset of boolean values.

A "zone" is a union of set intersections. There are exactly `2^k` intersections in a Venn diagram, where `k` is the number of sets. To highlight an entire set, we need a union of all possible intersections which form that set.

For example, in a 3 sets diagram, the (overall) first set is composed by four intersections: `100` for what is in the first set but outside sets 2 and outside set 3 `101` for the intersection between sets 1 and 3, outside set 2 `110` for the intersection between sets 1 and 2, outside set 3 `111` for the intersection between all three sets.

A meta-language can be used to define these intersections, using the values of `1` for what is inside the set, `0` for what is outside the set, and `-` when its either inside or outside of the set.

The command `"1--"` is translated as "display only the first, entire set" is equivalent with the union of the four intersections `"100 + 101 + 110 + 111"`.

The parameter `setnames` should have the same length as the number of sets specified by the parameter `x`.

When the parameter `x` is used as a metacommand, the number of sets is calculated as the number of characters in each intersection of the metacommand. One such character command is `"100 + 101 + 110 + 111"` or `"1--"`, and all intersections have exactly three characters.

It is also possible to use a regular, disjunctive normal form, like `"A"`, which is equivalent with `"Abc + AbC + ABc + ABC"`. When `x` is an expression written in DNF, if a valid R statement then quoting is not even necessary.

Argument `counts` is used when `x` is a list or a dataframe. When a list, it counts the number of common values for each intersection. When `x` is a dataframe (comprised of exclusively boolean values 0 and 1), it counts the number of similar rows, for each intersection. `counts` is activated by default when `x` is a list or a dataframe.

The argument `snames` establishes names for the different sets, or in its absence it is taken from `LETTERS`. When `x` is a list or a dataframe, `snames` is taken from their names. The length of the `snames` indicates the total number of sets.

The argument `ellipse` differentiates between two types of diagrams for 4 and 5 sets. The idea is to allow for as much space as possible for each intersection (also as equal as possible) and that is impossible if preserving the shape of an ellipse. The default is to create large space for the intersections, but users who prefer an ellipse might want to set this argument to `TRUE`.

Colors to fill the desired zones (or entire sets) can be supplied via the argument `zcolor` (the default is `"bw"` black and white, which means no colors at all). Users can either chose the predefined color style, using `zcolor = "style"`, or supply a vector of custom colors for each zone. If only one custom color is supplied, it will be recycled for all zones.

When using `zcolor = "style"`, any other additional arguments for the borders are ignored.

A different set of predefined colors is used, when argument `x` is a QCA type object (a truth table, either from a class `tt` or from a class `qca`). If custom colors are provided via `zcolor`, it should have a length of 3 colors: the first for the absence of the outcome (`0`), the second for the presence of the outcome (`1`), and the third for the contradictions (`C`). Remainders have no color, by default.

Via `...`, users can specify additional parameters, mainly for the outer borders of the sets, as specified by `par`. All of them are feeded to the function `lines()` which is responsible with the borders.

For up to 3 sets, the shapes can be circular. For more than 3 sets, the shape cannot be circular, in the case of 4 and 5 sets they are ellipses. For more than 5 sets the shapes cannot be continous (they might be monotone, but not continous). The 7 sets diagram is called "Adelaide" (Ruskey, 2005).

The most challenging diagram is the one with 6 sets, where for many years it was thought a Venn diagram didn't even exist. All diagrams are symetric, except for the one with 6 sets, where some of the sets have different shapes. The diagram in this package is an adaptation from Mamakani, K., Myrvold W. and F. Ruskey (2011),

## References

Ruskey, F. and M. Weston. 2005. Venn diagrams. Electronic Journal of Combinatorics, Dynamic Survey DS vol.5.

Mamakani, K., Myrvold W. and F. Ruskey. 2011. Generating all Simple Convexly-drawable Polar Symmetric 6-Venn Diagrams. International Workshop on Combinatorial Algorithms, Victoria. LNCS, 7056, 275-286.

## Examples

    # A simple Venn diagram with 3 sets
    venn(3)

    # display the first whole set
    venn("1--")

    # an equivalent command
    venn("100 + 110 + 101 + 111")

    # another equivalent command
    venn(c("100", "110", "101", "111"))

    # adding the labels for the intersections
    venn("1--", ilabels = TRUE)

    # using different parameters for the borders
    venn(4, lty = 5, col = "navyblue")

    # using ellipses
    venn(4, lty = 5, col = "navyblue", ellipse = TRUE)

    # a 5 sets Venn diagram
    venn(5)

    # a 5 sets Venn diagram using ellipses
    venn(5, ellipse = TRUE)

    # a 5 sets Venn diagram with intersection labels
    venn(5, ilabels = TRUE)

    # and a predefined color style
    venn(5, ilabels = TRUE, zcolor = "style")

    # a union of two sets
    venn("1---- + ----1")

    # with different colors
    venn("1---- + ----1", zcolor = c("red", "blue"))

    # same colors for the borders
    venn("1---- + ----1", zcolor = c("red", "blue"), col = c("red", "blue"))

    # 6 sets diagram
    venn(6)

    # 7 sets "Adelaide"
    venn(7)

    # artistic version
    venn(c("1000000", "0100000", "0010000", "0001000",
           "0000100", "0000010", "0000001", "1111111"))

    # when x is a list
    set.seed(12345)
    x <- list(First = 1:20, Second = 10:30, Third = sample(25:50, 15))
    venn(x)

    # when x is a dataframe
    set.seed(12345)
    x <- as.data.frame(matrix(sample(0:1, 150, replace=TRUE), ncol=5))
    venn(x)

    # using disjunctive normal form notation
    venn("A + Bc", snames = "A,B,C,D")

    # the union of two sets, example from above
    venn("A + E", snames = "A,B,C,D,E", zcol = c("red", "blue"))

    # if the expression is a valid R statment, it works even without quotes
    venn(A + bc + DE, snames = "A,B,C,D,E", zcol = c("red", "palegreen", "blue"))

    ## Not run:
    # # produce Venn diagrams for QCA objects
    #
    # library(QCA)
    #
    # data(CVF)
    # obj <- truthTable(CVF, "PROTEST", incl.cut = 0.8)
    #
    # venn(obj)
    #
    #
    # # to set transparency based on inclusion scores
    # venn(obj, transparency = obj$tt$incl)
    # ## End(Not run)